Ah don't worry about it, the long cage will work fine, it's just longer than it needs to be. No need to buy a new one.
My wife has a long cage on her 2x10, works perfectly, bike was originally 3x10. I have a medium cage which works fine on a mish mash on 9 and 10 speed gear built up to do 2x9. That bike was originally 3x9, with the same mech. (It's actually an old XTR so it's pretty much a short cage by todays standards!)